Options Struct Reference

command line interface More...

#include <Options.h>

Collaboration diagram for Options:

[legend]List of all members.

Public Member Functions
bool	isExonDistr () const
bool	isLinComb () const
void	setIntronFalse ()
bool	useIntron () const
bool	isVerbose () const
bool	doTraining () const
Static Public Member Functions
void	createInstance (int argc, char **argv, const string &id)
Options *	getInstance ()
Public Attributes
int	_cutOff
bool	quit
bool	_forceModels
string	m_fastaFile
string	m_evidenceListFile
string	_outputGeneModelFile
string	_matrixFile
string	_vecFile
string	_dtFile
string	_exonDistrFile
bool	_train
int	_subEnd5
int	_subEnd3
int	_trainOffSet
string	_hmmFile
Protected Member Functions
	Options (int argc, char **argv, const string &)
Friends
int	main (int, char **)
	allow individual programs (defined by the main) access private variables to customize program behavior

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Detailed Description

command line interface

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Member Function Documentation

bool Options::isExonDistr (   )  const [inline]

Parameters: argc  - number command line arguments argv  - command line arguments parameters gotton from c's main function.

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The documentation for this struct was generated from the following file:

• Options.h