Prediction Class Reference

Responsibilities:
sequence location. More...

#include <Prediction.h>

Inheritance diagram for Prediction:

[legend]Collaboration diagram for Prediction:

[legend]List of all members.

Public Types
typedef std::list< Prediction * >	DataStorageType
Public Member Functions
	Prediction (const SeqLoc &sl, AnnotationScore d, int modelId, const string &str)
	Prediction (const Prediction &pred)
	copy constructor
virtual	~Prediction ()
	no dynamic memory management, does contain one 'stl string' object.
virtual void	del ()=0
AnnotationScore	getScore () const
	return score associated with this object
void	setScore (const AnnotationScore &s)
	set score valuie
int	getModelId () const
	get integer idx of this coding sequence prediction
const string &	getDataSource () const
	get string identifier of the source of this prediction
virtual DataStorageType *	makePlaceHolders () const=0
	all prediction type objects must be able convert themselfs into a list of pointers that contain each coding sequence seperately
virtual void	print (std::ostream &os, const string &str) const
	print to ostream, information about this prediction

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Detailed Description

Responsibilities:
sequence location.

GeneModels are a collection of GenePrediction objects.
Sequence Match models are a collection of MatchPrediction objects, both of which
are just DataSetAbstractProduct, whose behavior are outlined by this object.
In other words, one knowledge source might be made up of a collection of predictions about related sequence locations or it might be just one sequence location Presumeably, there will be many types of predictions: CDS, start or stop codons, 5' UTRs, 3' UTRS, introns, exons for starters.
Collaborators:
SeqLoc, AnnotationScore
interface

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Constructor & Destructor Documentation

Prediction::Prediction (  const SeqLoc &  sl, AnnotationScore  d, int  modelId, const string &  str )  [inline]

Parameters: SeqLoc  - sequence location this prediction refers to AnnotationScore  - the evaluation score of this prediction int  - a counter of ith element in the prediction model (only usefull for models made up of multiple components this should be phased out) string  - string identifier, defining the "source" of this prediction this value is gnerally computed automatically by the InputData class, so that the scoring functions can uniquely seperate different prediction sources...(e.g. nap versus gap)

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The documentation for this class was generated from the following file:

• Prediction.h