Journal Publications

Talks and poster presentations
  • Talks
    • HISAT2: graph-based alignment of next-generation sequencing reads to a population of human genomes. Cold Spring Harbor Laboratory Meeting on Genome Informatics. Cold Spring Harbor, NY. October 2015. (pdf)
  • Posters
    • HISAT-genotype: fast software for analyzing human genomes on a personal computer. Cold Spring Harbor Laboratory Meeting on the Biology of Genomes. Cold Spring Harbor, NY. May 2016. (pdf)

    • Centrifuge: rapid and accurate classification of metagenomic sequences. Cold Spring Harbor Laboratory Meeting on the Biology of Genomes. Cold Spring Harbor, NY. May 2015. (pdf)

    • SAWHI (now HISAT): Spliced Alignment With Hierarchical Indexing. Cold Spring Harbor Laboratory Meeting on the Biology of Genomes. Cold Spring Harbor, NY. May 2014. (pdf)

    • Reconstruction and Estimation of Fusion Transcripts from RNA‐Sequencing. Cold Spring Harbor Laboratory Meeting on the Biology of Genomes. Cold Spring Harbor, NY. May 2013. (pdf)

    • TopHat2: Parallel mapping of transcriptomes to detect indels, gene fusions, and more. Cold Spring Harbor Laboratory Meeting on the Biology of Genomes. Cold Spring Harbor, NY. May 2012. (pdf)

    • TopHat-Fusion: an algorithm for discovery of novel fusion transcripts. Cold Spring Harbor Laboratory Meeting on the Biology of Genomes. Cold Spring Harbor, NY. May 2011. (pdf)